PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791303.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 90aa    MW: 9841.23 Da    PI: 9.5138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-1224641050
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     + f+k ++ i+ KA+ELS+ ++a+v +++fs++ k y+y 
  XP_009791303.1 24 LTAFAKTKEIIFQKAHELSITTGAKVGLLVFSPSAKPYTYG 64
                    689************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-9766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.844767IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-8929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-131072IPR002100Transcription factor, MADS-box
PfamPF003192.7E-122463IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MAKNKSLIQQ KAEIKALESM VELLTAFAKT KEIIFQKAHE LSITTGAKVG LLVFSPSAKP  60
YTYGSPHNFD TIAEGKTGET FGYNSRNSES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791303.12e-60PREDICTED: MADS-box transcription factor 15-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1490855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.14e-13AGAMOUS-like 91